PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10775_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 316aa    MW: 35080.3 Da    PI: 4.5438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10775_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11132175755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + Er+RR r+++++  Lr+l+P+      +K++Ka+i+  Av Y++ Lq
  RrC10775_p1 132 ISERKRRGRMKDKLYALRSLVPNI-----TKMDKASIVGDAVAYVQGLQ 175
                  67*********************7.....7*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.08E-12123177No hitNo description
SuperFamilySSF474593.79E-16123191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-15127193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9132175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKGRVIALTN LNDLELHNFL VDPNFDQFIN IIRGDDQTIE NPPLDFDLGG PLHNSPCFID  60
ESQFIPTPVD DLFDELPDID SNVAESFRSF EGESVVRAGG EDDYNDGDDS SATTTNNEGS  120
RKKKTDRSRT LISERKRRGR MKDKLYALRS LVPNITKMDK ASIVGDAVAY VQGLQSQAKT  180
LKADIAGLEA SLTSTGGYQE PASVAQKNQT FRSINPPVSK KIIQMDVIQV EEKEFYVRLV  240
CNKGEGVAAS LYKSLESLTS FQVQNSNLSS PSPETYLLTY TLDGTCFEQS LNLPNLKLWI  300
TGSLLNQGFE FIKPFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121137KKKTDRSRTLISERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634470.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1
SwissprotQ0V7X40.0FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A0D3BU900.0A0A0D3BU90_BRAOL; Uncharacterized protein
STRINGBra011972.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.10.0FER-like regulator of iron uptake